Boundary Waters Canoe Area Lakes and Streams
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| Name | County | Feature Type | Area |
|---|---|---|---|
| Eagle Lake | Cook | lake | Eagle Mountain |
| Eagle Lake | St. Louis | lake | Arnold |
| Eagles Nest Lake Number 2 | St. Louis | lake | Eagles Nest |
| Eagles Nest Lake Number Four | St. Louis | lake | Eagles Nest |
| Eagles Nest Lake Number One | St. Louis | lake | Eagles Nest |
| Eagles Nest Lake Number Three | St. Louis | lake | Eagles Nest |
| East Bay | Cook | bay | Good Harbor Bay OE E |
| East Bay | St. Louis | bay | Eagles Nest |
| East Bay | St. Louis | bay | Crane Lake |
| East Bearskin Lake | Cook | lake | Crocodile Lake |
| East Chub Lake | Lake | lake | Slate Lake East |
| East Dawkins Lake | Cook | lake | Gunflint Lake |
| East Fox Lake | Cook | lake | Toohey Lake |
| East Lake | Lake | lake | Wilson Lake |
| East Loon Bay | St. Louis | bay | Takucmich Lake |
| East Otter Lake | Cook | lake | South Lake |
| East Pike Lake | Cook | lake | Pine Lake East |
| East Pipe Lake | Cook | lake | Brule Lake |
| East Pope Lake | Cook | lake | South Lake |
| East Twin Lake | Cook | lake | Lima Mountain |
| East Two River | St. Louis | stream | Casco |
| East Two River | St. Louis | stream | Tower |
| Echo Lake | Cook | lake | Eagle Mountain |
| Echo Lake | Lake | lake | Cramer |
| Echo Lake | St. Louis | lake | Echo Lake |
| Echo River | St. Louis | stream | Crane Lake |
| Ecstasy Lake | Cook | lake | Gillis Lake |
| Ed Shave Lake | St. Louis | lake | Angleworm Lake |
| Eddy Lake | Lake | lake | Ogishkemuncie Lake |
| Edge Lake | Lake | lake | Lake Polly |
| Edith Lake | Cook | lake | Long Island Lake |
| Edward Lake | Lake | lake | Quadga Lake |
| Eggers Lake | Cook | lake | Lima Mountain |
| Eighteen Lake | Lake | lake | Sawbill Landing |
| Eightmile Creek | St. Louis | stream | Picket Lake |
| Eikala Lake | Lake | lake | Slate Lake East |
| Ek Lake | St. Louis | lake | Ash River NE |
| Eks Bay | St. Louis | bay | Ash River NE |
| Elbow Creek | Cook | stream | Grand Marais |
| Elbow Creek | St. Louis | stream | Zim |
| Elbow Lake | Cook | lake | Grand Marais |
| Elbow Lake | Lake | lake | Wilson Lake |
| Elbow Lake | St. Louis | lake | Side Lake |
| Elbow Lake | St. Louis | lake | Eveleth |
| Elbow Lake | St. Louis | lake | Myrtle Lake |
| Elephant Creek | St. Louis | stream | Elephant Lake |
| Elephant Lake | St. Louis | lake | Elephant Lake |
| Elixir Lake | Lake | lake | Silver Island Lake |
| Elk Lake | Lake | lake | Kekekabic Lake |
| Ell Lake | Cook | lake | Long Island Lake |
| Ella Hall Lake | Lake | lake | Farm Lake |
| Ella Lake | Cook | lake | Beth Lake |
| Ellen Lake | Lake | lake | Sawbill Landing |
| Ellquist Lake | Cook | lake | Gillis Lake |
| Elm Lake | Cook | lake | Gillis Lake |
| Elton Lake | Lake | lake | Ogishkemuncie Lake |
| Elusion Lake | Cook | lake | Gillis Lake |
| Embla Lake | Lake | lake | Ester Lake |
| Emerald Lake | St. Louis | lake | Shell Lake |
| Ennis Lake | Lake | lake | Snowbank Lake |
| Ensign Lake | Lake | lake | Ensign Lake East |
| Ernest Lake | Cook | lake | Long Island Lake |
| Eskwagama Lake | Lake | lake | Farm Lake |
| Ester Lake | Lake | lake | Ester Lake |
| Esther Lake | Cook | lake | Tom Lake |
| Eugene Lake | St. Louis | lake | Takucmich Lake |
| Everett Lake | Cook | lake | Gillis Lake |
| Everett Lake | St. Louis | lake | Shagawa Lake |
| Everetts Bay | St. Louis | bay | Tower |
| Exploit Lake | Lake | lake | Quadga Lake |
| Explorer Lake | Lake | lake | Ensign Lake East |
| Extortion Creek | Cook | stream | Long Island Lake |
| Extortion Lake | Cook | lake | Long Island Lake |
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